FHIR Osiris Implementation Guide
2.1.0 - ci-build

FHIR Osiris Implementation Guide - Local Development build (v2.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Pathogenicity Value Set - JSON Representation

Draft as of 2024-03-21

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{
  "resourceType" : "ValueSet",
  "id" : "Pathogenicity",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <code>https://github.com/siric-osiris/OSIRIS</code><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>O81-1</td><td>Pathogenic</td></tr><tr><td>O81-2</td><td>Likely pathogenic</td></tr><tr><td>O81-3</td><td>Uncertain significance</td></tr><tr><td>O81-4</td><td>Likely benign</td></tr><tr><td>O81-5</td><td>Benign</td></tr></table></li><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-umls.html\"><code>http://terminology.hl7.org/CodeSystem/umls</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C0439673</td><td>Unknown</td></tr></table></li></ul></div>"
  },
  "url" : "https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Pathogenicity",
  "version" : "2.1.0",
  "name" : "Pathogenicity",
  "title" : "Pathogenicity Value Set",
  "status" : "draft",
  "date" : "2024-03-21T14:34:32+00:00",
  "publisher" : "Arkhn",
  "contact" : [
    {
      "name" : "Arkhn",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://arkhn.com"
        },
        {
          "system" : "email",
          "value" : "contact@arkhn.com"
        }
      ]
    },
    {
      "name" : "Nicolas Riss",
      "telecom" : [
        {
          "system" : "email",
          "value" : "nicolas@arkhn.com"
        }
      ]
    }
  ],
  "description" : "Pathogenicity",
  "compose" : {
    "include" : [
      {
        "system" : "https://github.com/siric-osiris/OSIRIS",
        "concept" : [
          {
            "code" : "O81-1",
            "display" : "Pathogenic"
          },
          {
            "code" : "O81-2",
            "display" : "Likely pathogenic"
          },
          {
            "code" : "O81-3",
            "display" : "Uncertain significance"
          },
          {
            "code" : "O81-4",
            "display" : "Likely benign"
          },
          {
            "code" : "O81-5",
            "display" : "Benign"
          }
        ]
      },
      {
        "system" : "http://terminology.hl7.org/CodeSystem/umls",
        "concept" : [
          {
            "code" : "C0439673",
            "display" : "Unknown"
          }
        ]
      }
    ]
  }
}