FHIR Osiris Implementation Guide - Local Development build (v2.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
: fhir-osiris-example-sequencinganalysis-2 - TTL Representation
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:Observation ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "fhir-osiris-example-sequencinganalysis-2"] ; #
fhir:meta [
( fhir:profile [
fhir:v "https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/sequencing-analysis"^^xsd:anyURI ;
fhir:link <https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/sequencing-analysis> ] )
] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"fhir-osiris-example-sequencinganalysis-2\"> </a><a name=\"hcfhir-osiris-example-sequencinganalysis-2\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation "fhir-osiris-example-sequencinganalysis-2" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-sequencing-analysis.html\">Sequencing Analysis</a></p></div><p><b>status</b>: final</p><p><b>code</b>: Omic <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"CodeSystem-OsirisCS.html\">Osiris code system</a>#C37-3)</span></p><p><b>subject</b>: <a href=\"Patient-L304.html\">Patient/L304</a></p><p><b>focus</b>: <a href=\"Condition-fhir-osiris-example-TumorPathologyEvent-instance-2.html\">Condition/fhir-osiris-example-TumorPathologyEvent-instance-2</a></p><p><b>effective</b>: 2018-02-07</p><p><b>method</b>: O6-12 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (OSIRIS#O6-12)</span></p><p><b>specimen</b>: <a href=\"Specimen-fhir-osiris-example-biologicalsample-2.html\">Specimen/fhir-osiris-example-biologicalsample-2</a></p><p><b>device</b>: <a href=\"Device-fhir-osiris-example-sequencingdevice-2.html\">Device/fhir-osiris-example-sequencingdevice-2</a></p><blockquote><p><b>component</b></p><p><b>code</b>: C0162801 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-umls.html\">Unified Medical Language System</a>#C0162801)</span></p><p><b>value</b>: RNAseq pipeline v3.2</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: 258049002 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-umls.html\">Unified Medical Language System</a>#258049002)</span></p><p><b>value</b>: 2017-09-19</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: C3260254 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-umls.html\">Unified Medical Language System</a>#C3260254)</span></p><p><b>value</b>: 50</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: C0032246 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-umls.html\">Unified Medical Language System</a>#C0032246)</span></p><p><b>value</b>: O13-2 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (OSIRIS#O13-2)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Intrachromosomal breakpoint <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA26327-9)</span></p></blockquote></div>"
] ; #
fhir:status [ fhir:v "final"] ; #
fhir:code [
( fhir:coding [
fhir:system [ fhir:v "https://terminology.arkhn.com/osiris"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C37-3" ] ] )
] ; #
fhir:subject [
fhir:reference [ fhir:v "Patient/L304" ]
] ; #
fhir:focus ( [
fhir:reference [ fhir:v "Condition/fhir-osiris-example-TumorPathologyEvent-instance-2" ]
] ) ; #
fhir:effective [ fhir:v "2018-02-07"^^xsd:date] ; #
fhir:method [
( fhir:coding [
fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "O6-12" ] ] )
] ; #
fhir:specimen [
fhir:reference [ fhir:v "Specimen/fhir-osiris-example-biologicalsample-2" ]
] ; #
fhir:device [
fhir:reference [ fhir:v "Device/fhir-osiris-example-sequencingdevice-2" ]
] ; #
fhir:component ( [
fhir:code [
( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C0162801" ] ] ) ] ;
fhir:value [ fhir:v "RNAseq pipeline v3.2" ]
] [
fhir:code [
( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "258049002" ] ] ) ] ;
fhir:value [ fhir:v "2017-09-19"^^xsd:date ]
] [
fhir:code [
( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C3260254" ] ] ) ] ;
fhir:value [
a fhir:Quantity ;
fhir:value [ fhir:v "50"^^xsd:decimal ] ]
] [
fhir:code [
( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C0032246" ] ] ) ] ;
fhir:value [
a fhir:CodeableConcept ;
( fhir:coding [
fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "O13-2" ] ] ) ]
] [
fhir:code [
( fhir:coding [
a loinc:LA26327-9 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA26327-9" ] ] ) ]
] ) . #
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