FHIR Osiris Implementation Guide
2.1.0 - ci-build

FHIR Osiris Implementation Guide - Local Development build (v2.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: fhir-osiris-example-sequencinganalysis-2 - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="fhir-osiris-example-sequencinganalysis-2"/>
  <meta>
    <profile
             value="https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/sequencing-analysis"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative: Observation</b><a name="fhir-osiris-example-sequencinganalysis-2"> </a><a name="hcfhir-osiris-example-sequencinganalysis-2"> </a></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource Observation &quot;fhir-osiris-example-sequencinganalysis-2&quot; </p><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-sequencing-analysis.html">Sequencing Analysis</a></p></div><p><b>status</b>: final</p><p><b>code</b>: Omic <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="CodeSystem-OsirisCS.html">Osiris code system</a>#C37-3)</span></p><p><b>subject</b>: <a href="Patient-L304.html">Patient/L304</a></p><p><b>focus</b>: <a href="Condition-fhir-osiris-example-TumorPathologyEvent-instance-2.html">Condition/fhir-osiris-example-TumorPathologyEvent-instance-2</a></p><p><b>effective</b>: 2018-02-07</p><p><b>method</b>: O6-12 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (OSIRIS#O6-12)</span></p><p><b>specimen</b>: <a href="Specimen-fhir-osiris-example-biologicalsample-2.html">Specimen/fhir-osiris-example-biologicalsample-2</a></p><p><b>device</b>: <a href="Device-fhir-osiris-example-sequencingdevice-2.html">Device/fhir-osiris-example-sequencingdevice-2</a></p><blockquote><p><b>component</b></p><p><b>code</b>: C0162801 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.3.0/CodeSystem-umls.html">Unified Medical Language System</a>#C0162801)</span></p><p><b>value</b>: RNAseq pipeline v3.2</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: 258049002 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.3.0/CodeSystem-umls.html">Unified Medical Language System</a>#258049002)</span></p><p><b>value</b>: 2017-09-19</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: C3260254 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.3.0/CodeSystem-umls.html">Unified Medical Language System</a>#C3260254)</span></p><p><b>value</b>: 50</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: C0032246 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.3.0/CodeSystem-umls.html">Unified Medical Language System</a>#C0032246)</span></p><p><b>value</b>: O13-2 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (OSIRIS#O13-2)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Intrachromosomal breakpoint <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://loinc.org/">LOINC</a>#LA26327-9)</span></p></blockquote></div>
  </text>
  <status value="final"/>
  <code>
    <coding>
      <system value="https://terminology.arkhn.com/osiris"/>
      <code value="C37-3"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/L304"/>
  </subject>
  <focus>🔗 
    <reference
               value="Condition/fhir-osiris-example-TumorPathologyEvent-instance-2"/>
  </focus>
  <effectiveDateTime value="2018-02-07"/>
  <method>
    <coding>
      <system value="https://github.com/siric-osiris/OSIRIS"/>
      <code value="O6-12"/>
    </coding>
  </method>
  <specimen>🔗 
    <reference value="Specimen/fhir-osiris-example-biologicalsample-2"/>
  </specimen>
  <device>🔗 
    <reference value="Device/fhir-osiris-example-sequencingdevice-2"/>
  </device>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="C0162801"/>
      </coding>
    </code>
    <valueString value="RNAseq pipeline v3.2"/>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="258049002"/>
      </coding>
    </code>
    <valueDateTime value="2017-09-19"/>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="C3260254"/>
      </coding>
    </code>
    <valueQuantity>
      <value value="50"/>
    </valueQuantity>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="C0032246"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="https://github.com/siric-osiris/OSIRIS"/>
        <code value="O13-2"/>
      </coding>
    </valueCodeableConcept>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA26327-9"/>
      </coding>
    </code>
  </component>
</Observation>