Name	Flags	Card.	Type	Description & Constraints
Specimen		0..*	Specimen	Sample for analysis
extension		1..*	Extension	Extension
BiologicalSampleOrigin	S	1..1	CodeableConcept	The origin of the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin Binding: Biological Sample Origin Value Set (extensible)
value[x]:valueCodeableConcept		1..1	CodeableConcept	The origin of the sample
BasedOnCondition	S	0..1	Reference(Tumor Pathology Event)	Tumur Pathology Event concerned by the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition
value[x]:valueReference		0..1	Reference(Tumor Pathology Event)	Value of extension
identifier	S	1..1	Identifier	Identifier of the biological sample
type	S	1..1	CodeableConcept	The nature of the sample Binding: Biological Sample Nature Value Set (preferred)
subject	S	0..1	Reference(Oncology Patient)	Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
parent	S	0..1	Reference(Biological Sample)	Identifier of the parent biological sample
collection
Slices for collected[x]		1..1	dateTime	Collection time Slice: Unordered, Open by type:$this
collected[x]:collectedDateTime	S	1..1	dateTime	Collection date
quantity	S	0..1	SimpleQuantity	Percentage of tumor cells
value		0..1	decimal	Numerical value (with implicit precision)
unit		0..1	string	Unit representation Required Pattern: %
code		0..1	code	Coded form of the unit Required Pattern: C4055283
bodySite	S	1..1	CodeableConcept	Topography of the tumor sample Binding: Topography Value Set (preferred)
condition	S	0..1	CodeableConcept	Storage method Binding: Storage temperature Value Set (extensible)
text		0..1	string	Plain text representation of the concept Required Pattern: Storage temperature of the sample.
Documentation for this format

Terminology Bindings (Differential)

Path	Conformance	ValueSet	URI
Specimen.type	preferred	BiologicalSampleNature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleNature from this IG
Specimen.collection.bodySite	preferred	Topography https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Topography from this IG
Specimen.condition	extensible	StorageTemperature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/StorageTemperature from this IG

Name	Flags	Card.	Type	Description & Constraints
Specimen		0..*	Specimen	Sample for analysis
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
BiologicalSampleOrigin	S	1..1	CodeableConcept	The origin of the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin Binding: Biological Sample Origin Value Set (extensible)
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin"
Slices for value[x]		1..1	CodeableConcept	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueCodeableConcept	S	1..1	CodeableConcept	The origin of the sample Binding: Biological Sample Origin Value Set (extensible)
BasedOnCondition	S	0..1	Reference(Tumor Pathology Event)	Tumur Pathology Event concerned by the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition"
Slices for value[x]		0..1	Reference()	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueReference	S	0..1	Reference(Tumor Pathology Event)	Value of extension
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	SΣ	1..1	Identifier	Identifier of the biological sample
status	?!Σ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	SΣ	1..1	CodeableConcept	The nature of the sample Binding: Biological Sample Nature Value Set (preferred)
subject	SΣC	0..1	Reference(Oncology Patient)	Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device ref-1: SHALL have a contained resource if a local reference is provided
parent	SC	0..1	Reference(Biological Sample)	Identifier of the parent biological sample ref-1: SHALL have a contained resource if a local reference is provided
collection		0..1	BackboneElement	Collection details
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
Slices for collected[x]	Σ	1..1	dateTime	Collection time Slice: Unordered, Closed by type:$this
collected[x]:collectedDateTime	SΣ	1..1	dateTime	Collection date
quantity	SC	0..1	SimpleQuantity	Percentage of tumor cells qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
value	Σ	0..1	decimal	Numerical value (with implicit precision)
unit	Σ	0..1	string	Unit representation Required Pattern: %
system	ΣC	0..1	uri	System that defines coded unit form
code	Σ	0..1	code	Coded form of the unit Required Pattern: C4055283
bodySite	S	1..1	CodeableConcept	Topography of the tumor sample Binding: Topography Value Set (preferred)
condition	SΣ	0..1	CodeableConcept	Storage method Binding: Storage temperature Value Set (extensible)
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Storage temperature of the sample.
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept	extensible	BiologicalSampleOrigin https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleOrigin from this IG
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 from the FHIR Standard
Specimen.type	preferred	BiologicalSampleNature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleNature from this IG
Specimen.collection.bodySite	preferred	Topography https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Topography from this IG
Specimen.condition	extensible	StorageTemperature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/StorageTemperature from this IG

Name	Flags	Card.	Type	Description & Constraints
Specimen		0..*	Specimen	Sample for analysis
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation
contained		0..*	Resource	Contained, inline Resources
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
BiologicalSampleOrigin	S	1..1	CodeableConcept	The origin of the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin Binding: Biological Sample Origin Value Set (extensible)
id		0..1	string	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin"
Slices for value[x]		1..1	CodeableConcept	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueCodeableConcept	S	1..1	CodeableConcept	The origin of the sample Binding: Biological Sample Origin Value Set (extensible)
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
coding	Σ	0..*	Coding	Code defined by a terminology system
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Origin of the sample
BasedOnCondition	S	0..1	Reference(Tumor Pathology Event)	Tumur Pathology Event concerned by the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition
id		0..1	string	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition"
Slices for value[x]		0..1	Reference()	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueReference	S	0..1	Reference(Tumor Pathology Event)	Value of extension
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	SΣ	1..1	Identifier	Identifier of the biological sample
accessionIdentifier	Σ	0..1	Identifier	Identifier assigned by the lab
status	?!Σ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	SΣ	1..1	CodeableConcept	The nature of the sample Binding: Biological Sample Nature Value Set (preferred)
subject	SΣC	0..1	Reference(Oncology Patient)	Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device ref-1: SHALL have a contained resource if a local reference is provided
receivedTime	Σ	0..1	dateTime	The time when specimen was received for processing
parent	SC	0..1	Reference(Biological Sample)	Identifier of the parent biological sample ref-1: SHALL have a contained resource if a local reference is provided
request	C	0..*	Reference(ServiceRequest)	Why the specimen was collected ref-1: SHALL have a contained resource if a local reference is provided
collection		0..1	BackboneElement	Collection details
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
collector	ΣC	0..1	Reference(Practitioner | PractitionerRole)	Who collected the specimen ref-1: SHALL have a contained resource if a local reference is provided
Slices for collected[x]	Σ	1..1	dateTime	Collection time Slice: Unordered, Closed by type:$this
collected[x]:collectedDateTime	SΣ	1..1	dateTime	Collection date
duration	ΣC	0..1	Duration	How long it took to collect specimen Binding: CommonUCUMCodesForDuration (extensible): Appropriate units for Duration. Additional Bindings Purpose AllUCUMExpressionForTime Max Binding qty-3: If a code for the unit is present, the system SHALL also be present drt-1: There SHALL be a code if there is a value and it SHALL be an expression of time. If system is present, it SHALL be UCUM.
quantity	SC	0..1	SimpleQuantity	Percentage of tumor cells qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
value	Σ	0..1	decimal	Numerical value (with implicit precision)
unit	Σ	0..1	string	Unit representation Required Pattern: %
system	ΣC	0..1	uri	System that defines coded unit form
code	Σ	0..1	code	Coded form of the unit Required Pattern: C4055283
method		0..1	CodeableConcept	Technique used to perform collection Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
bodySite	S	1..1	CodeableConcept	Topography of the tumor sample Binding: Topography Value Set (preferred)
fastingStatus[x]	Σ	0..1		Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
fastingStatusCodeableConcept			CodeableConcept
fastingStatusDuration			Duration
processing		0..*	BackboneElement	Processing and processing step details
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
description		0..1	string	Textual description of procedure
procedure		0..1	CodeableConcept	Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
additive	C	0..*	Reference(Substance)	Material used in the processing step ref-1: SHALL have a contained resource if a local reference is provided
time[x]		0..1		Date and time of specimen processing
timeDateTime			dateTime
timePeriod			Period
container		0..*	BackboneElement	Direct container of specimen (tube/slide, etc.)
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
identifier	Σ	0..*	Identifier	Id for the container
description		0..1	string	Textual description of the container
type		0..1	CodeableConcept	Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container.
capacity	C	0..1	SimpleQuantity	Container volume or size qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
specimenQuantity	C	0..1	SimpleQuantity	Quantity of specimen within container qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
additive[x]		0..1		Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
additiveCodeableConcept			CodeableConcept
additiveReference			Reference(Substance)
condition	SΣ	0..1	CodeableConcept	Storage method Binding: Storage temperature Value Set (extensible)
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
coding	Σ	0..*	Coding	Code defined by a terminology system
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Storage temperature of the sample.
note		0..*	Annotation	Comments
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.language	preferred	CommonLanguages Additional Bindings Purpose AllLanguages Max Binding http://hl7.org/fhir/ValueSet/languages from the FHIR Standard
Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept	extensible	BiologicalSampleOrigin https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleOrigin from this IG
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 from the FHIR Standard
Specimen.type	preferred	BiologicalSampleNature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleNature from this IG
Specimen.collection.duration	extensible	CommonUCUMCodesForDuration Additional Bindings Purpose AllUCUMExpressionForTime Max Binding http://hl7.org/fhir/ValueSet/duration-units from the FHIR Standard
Specimen.collection.method	example	FHIRSpecimenCollectionMethod http://hl7.org/fhir/ValueSet/specimen-collection-method from the FHIR Standard
Specimen.collection.bodySite	preferred	Topography https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Topography from this IG
Specimen.collection.fastingStatus[x]	extensible	Hl7VSRelevantClincialInformation http://terminology.hl7.org/ValueSet/v2-0916
Specimen.processing.procedure	example	SpecimenProcessingProcedure http://hl7.org/fhir/ValueSet/specimen-processing-procedure from the FHIR Standard
Specimen.container.type	example	SpecimenContainerType http://hl7.org/fhir/ValueSet/specimen-container-type from the FHIR Standard
Specimen.container.additive[x]	example	Hl7VSAdditivePreservative http://terminology.hl7.org/ValueSet/v2-0371
Specimen.condition	extensible	StorageTemperature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/StorageTemperature from this IG

Summary

Mandatory: 4 elements (3 nested mandatory elements)
Must-Support: 10 elements

Structures

This structure refers to these other structures:

• Tumor Pathology Event (https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/tumor-pathology-event)
• Oncology Patient (https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/onco-patient)
• Biological Sample (https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/onco-biological-sample)

Extensions

This structure refers to these extensions:

• https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin
• https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition

Slices

This structure defines the following Slices:

• The element Specimen.collection.collected[x] is sliced based on the value of type:$this

Name	Flags	Card.	Type	Description & Constraints
Specimen		0..*	Specimen	Sample for analysis
extension		1..*	Extension	Extension
BiologicalSampleOrigin	S	1..1	CodeableConcept	The origin of the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin Binding: Biological Sample Origin Value Set (extensible)
value[x]:valueCodeableConcept		1..1	CodeableConcept	The origin of the sample
BasedOnCondition	S	0..1	Reference(Tumor Pathology Event)	Tumur Pathology Event concerned by the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition
value[x]:valueReference		0..1	Reference(Tumor Pathology Event)	Value of extension
identifier	S	1..1	Identifier	Identifier of the biological sample
type	S	1..1	CodeableConcept	The nature of the sample Binding: Biological Sample Nature Value Set (preferred)
subject	S	0..1	Reference(Oncology Patient)	Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
parent	S	0..1	Reference(Biological Sample)	Identifier of the parent biological sample
collection
Slices for collected[x]		1..1	dateTime	Collection time Slice: Unordered, Open by type:$this
collected[x]:collectedDateTime	S	1..1	dateTime	Collection date
quantity	S	0..1	SimpleQuantity	Percentage of tumor cells
value		0..1	decimal	Numerical value (with implicit precision)
unit		0..1	string	Unit representation Required Pattern: %
code		0..1	code	Coded form of the unit Required Pattern: C4055283
bodySite	S	1..1	CodeableConcept	Topography of the tumor sample Binding: Topography Value Set (preferred)
condition	S	0..1	CodeableConcept	Storage method Binding: Storage temperature Value Set (extensible)
text		0..1	string	Plain text representation of the concept Required Pattern: Storage temperature of the sample.
Documentation for this format

Terminology Bindings (Differential)

Path	Conformance	ValueSet	URI
Specimen.type	preferred	BiologicalSampleNature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleNature from this IG
Specimen.collection.bodySite	preferred	Topography https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Topography from this IG
Specimen.condition	extensible	StorageTemperature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/StorageTemperature from this IG

Name	Flags	Card.	Type	Description & Constraints
Specimen		0..*	Specimen	Sample for analysis
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
BiologicalSampleOrigin	S	1..1	CodeableConcept	The origin of the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin Binding: Biological Sample Origin Value Set (extensible)
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin"
Slices for value[x]		1..1	CodeableConcept	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueCodeableConcept	S	1..1	CodeableConcept	The origin of the sample Binding: Biological Sample Origin Value Set (extensible)
BasedOnCondition	S	0..1	Reference(Tumor Pathology Event)	Tumur Pathology Event concerned by the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition"
Slices for value[x]		0..1	Reference()	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueReference	S	0..1	Reference(Tumor Pathology Event)	Value of extension
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	SΣ	1..1	Identifier	Identifier of the biological sample
status	?!Σ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	SΣ	1..1	CodeableConcept	The nature of the sample Binding: Biological Sample Nature Value Set (preferred)
subject	SΣC	0..1	Reference(Oncology Patient)	Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device ref-1: SHALL have a contained resource if a local reference is provided
parent	SC	0..1	Reference(Biological Sample)	Identifier of the parent biological sample ref-1: SHALL have a contained resource if a local reference is provided
collection		0..1	BackboneElement	Collection details
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
Slices for collected[x]	Σ	1..1	dateTime	Collection time Slice: Unordered, Closed by type:$this
collected[x]:collectedDateTime	SΣ	1..1	dateTime	Collection date
quantity	SC	0..1	SimpleQuantity	Percentage of tumor cells qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
value	Σ	0..1	decimal	Numerical value (with implicit precision)
unit	Σ	0..1	string	Unit representation Required Pattern: %
system	ΣC	0..1	uri	System that defines coded unit form
code	Σ	0..1	code	Coded form of the unit Required Pattern: C4055283
bodySite	S	1..1	CodeableConcept	Topography of the tumor sample Binding: Topography Value Set (preferred)
condition	SΣ	0..1	CodeableConcept	Storage method Binding: Storage temperature Value Set (extensible)
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Storage temperature of the sample.
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept	extensible	BiologicalSampleOrigin https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleOrigin from this IG
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 from the FHIR Standard
Specimen.type	preferred	BiologicalSampleNature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleNature from this IG
Specimen.collection.bodySite	preferred	Topography https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Topography from this IG
Specimen.condition	extensible	StorageTemperature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/StorageTemperature from this IG

Name	Flags	Card.	Type	Description & Constraints
Specimen		0..*	Specimen	Sample for analysis
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation
contained		0..*	Resource	Contained, inline Resources
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
BiologicalSampleOrigin	S	1..1	CodeableConcept	The origin of the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin Binding: Biological Sample Origin Value Set (extensible)
id		0..1	string	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin"
Slices for value[x]		1..1	CodeableConcept	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueCodeableConcept	S	1..1	CodeableConcept	The origin of the sample Binding: Biological Sample Origin Value Set (extensible)
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
coding	Σ	0..*	Coding	Code defined by a terminology system
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Origin of the sample
BasedOnCondition	S	0..1	Reference(Tumor Pathology Event)	Tumur Pathology Event concerned by the sample URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition
id		0..1	string	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition"
Slices for value[x]		0..1	Reference()	Value of extension Slice: Unordered, Closed by type:$this
value[x]:valueReference	S	0..1	Reference(Tumor Pathology Event)	Value of extension
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	SΣ	1..1	Identifier	Identifier of the biological sample
accessionIdentifier	Σ	0..1	Identifier	Identifier assigned by the lab
status	?!Σ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	SΣ	1..1	CodeableConcept	The nature of the sample Binding: Biological Sample Nature Value Set (preferred)
subject	SΣC	0..1	Reference(Oncology Patient)	Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device ref-1: SHALL have a contained resource if a local reference is provided
receivedTime	Σ	0..1	dateTime	The time when specimen was received for processing
parent	SC	0..1	Reference(Biological Sample)	Identifier of the parent biological sample ref-1: SHALL have a contained resource if a local reference is provided
request	C	0..*	Reference(ServiceRequest)	Why the specimen was collected ref-1: SHALL have a contained resource if a local reference is provided
collection		0..1	BackboneElement	Collection details
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
collector	ΣC	0..1	Reference(Practitioner | PractitionerRole)	Who collected the specimen ref-1: SHALL have a contained resource if a local reference is provided
Slices for collected[x]	Σ	1..1	dateTime	Collection time Slice: Unordered, Closed by type:$this
collected[x]:collectedDateTime	SΣ	1..1	dateTime	Collection date
duration	ΣC	0..1	Duration	How long it took to collect specimen Binding: CommonUCUMCodesForDuration (extensible): Appropriate units for Duration. Additional Bindings Purpose AllUCUMExpressionForTime Max Binding qty-3: If a code for the unit is present, the system SHALL also be present drt-1: There SHALL be a code if there is a value and it SHALL be an expression of time. If system is present, it SHALL be UCUM.
quantity	SC	0..1	SimpleQuantity	Percentage of tumor cells qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
value	Σ	0..1	decimal	Numerical value (with implicit precision)
unit	Σ	0..1	string	Unit representation Required Pattern: %
system	ΣC	0..1	uri	System that defines coded unit form
code	Σ	0..1	code	Coded form of the unit Required Pattern: C4055283
method		0..1	CodeableConcept	Technique used to perform collection Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
bodySite	S	1..1	CodeableConcept	Topography of the tumor sample Binding: Topography Value Set (preferred)
fastingStatus[x]	Σ	0..1		Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
fastingStatusCodeableConcept			CodeableConcept
fastingStatusDuration			Duration
processing		0..*	BackboneElement	Processing and processing step details
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
description		0..1	string	Textual description of procedure
procedure		0..1	CodeableConcept	Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
additive	C	0..*	Reference(Substance)	Material used in the processing step ref-1: SHALL have a contained resource if a local reference is provided
time[x]		0..1		Date and time of specimen processing
timeDateTime			dateTime
timePeriod			Period
container		0..*	BackboneElement	Direct container of specimen (tube/slide, etc.)
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
identifier	Σ	0..*	Identifier	Id for the container
description		0..1	string	Textual description of the container
type		0..1	CodeableConcept	Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container.
capacity	C	0..1	SimpleQuantity	Container volume or size qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
specimenQuantity	C	0..1	SimpleQuantity	Quantity of specimen within container qty-3: If a code for the unit is present, the system SHALL also be present sqty-1: The comparator is not used on a SimpleQuantity
additive[x]		0..1		Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
additiveCodeableConcept			CodeableConcept
additiveReference			Reference(Substance)
condition	SΣ	0..1	CodeableConcept	Storage method Binding: Storage temperature Value Set (extensible)
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
coding	Σ	0..*	Coding	Code defined by a terminology system
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Storage temperature of the sample.
note		0..*	Annotation	Comments
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.language	preferred	CommonLanguages Additional Bindings Purpose AllLanguages Max Binding http://hl7.org/fhir/ValueSet/languages from the FHIR Standard
Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept	extensible	BiologicalSampleOrigin https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleOrigin from this IG
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 from the FHIR Standard
Specimen.type	preferred	BiologicalSampleNature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/BiologicalSampleNature from this IG
Specimen.collection.duration	extensible	CommonUCUMCodesForDuration Additional Bindings Purpose AllUCUMExpressionForTime Max Binding http://hl7.org/fhir/ValueSet/duration-units from the FHIR Standard
Specimen.collection.method	example	FHIRSpecimenCollectionMethod http://hl7.org/fhir/ValueSet/specimen-collection-method from the FHIR Standard
Specimen.collection.bodySite	preferred	Topography https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/Topography from this IG
Specimen.collection.fastingStatus[x]	extensible	Hl7VSRelevantClincialInformation http://terminology.hl7.org/ValueSet/v2-0916
Specimen.processing.procedure	example	SpecimenProcessingProcedure http://hl7.org/fhir/ValueSet/specimen-processing-procedure from the FHIR Standard
Specimen.container.type	example	SpecimenContainerType http://hl7.org/fhir/ValueSet/specimen-container-type from the FHIR Standard
Specimen.container.additive[x]	example	Hl7VSAdditivePreservative http://terminology.hl7.org/ValueSet/v2-0371
Specimen.condition	extensible	StorageTemperature https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/StorageTemperature from this IG

Summary

Mandatory: 4 elements (3 nested mandatory elements)
Must-Support: 10 elements

Structures

This structure refers to these other structures:

• Tumor Pathology Event (https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/tumor-pathology-event)
• Oncology Patient (https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/onco-patient)
• Biological Sample (https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/onco-biological-sample)

Extensions

This structure refers to these extensions:

• https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BiologicalSampleOrigin
• https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/BasedOnCondition

Slices

This structure defines the following Slices:

• The element Specimen.collection.collected[x] is sliced based on the value of type:$this