FHIR Osiris Implementation Guide - Local Development build (v2.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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Resource Profile: Sequencing Device

Description of a sequencing device used for a Sequencing Analysis.

Usage:

• Refer to this Resource Profile: Sequencing Analysis
• Examples for this Resource Profile: Device/fhir-osiris-example-sequencingdevice-1, Device/fhir-osiris-example-sequencingdevice-2 and Device/fhir-osiris-example-sequencingdevice-3

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

• Differential Table
• Key Elements Table
• Snapshot Table
• Statistics/References
• All

This structure is derived from Device

Name	Flags	Card.	Type	Description & Constraints
Device		0..*	Device	Item used in healthcare
identifier	S	0..1	Identifier	GEO accession number
type	S	1..1	CodeableConcept	Technology name Binding: Platform Name (extensible)
version	S	0..1	BackboneElement	The actual design of the device or software version running on the device
type		0..1	CodeableConcept	The type of the device version
coding		0..*	Coding	Name of the gene panel Binding: Panel Name (required)
text		0..1	string	Plain text representation of the concept Required Pattern: Name of the gene panel
Documentation for this format

Terminology Bindings (Differential)

Path	Conformance	ValueSet	URI
Device.type	extensible	PlatformName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PlatformName from this IG
Device.version.type.coding	required	PanelName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PanelName from this IG

Name	Flags	Card.	Type	Description & Constraints
Device		0..*	Device	Item used in healthcare
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	S	0..1	Identifier	GEO accession number
status	?!Σ	0..1	code	active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device.
type	S	1..1	CodeableConcept	Technology name Binding: Platform Name (extensible)
version	S	0..1	BackboneElement	The actual design of the device or software version running on the device
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
type		0..1	CodeableConcept	The type of the device version
coding	Σ	0..*	Coding	Name of the gene panel Binding: Panel Name (required)
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Name of the gene panel
value		1..1	string	The version text
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Device.status	required	FHIRDeviceStatus http://hl7.org/fhir/ValueSet/device-status|4.0.1 from the FHIR Standard
Device.type	extensible	PlatformName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PlatformName from this IG
Device.version.type.coding	required	PanelName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PanelName from this IG

Name	Flags	Card.	Type	Description & Constraints
Device		0..*	Device	Item used in healthcare
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation
contained		0..*	Resource	Contained, inline Resources
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	S	0..1	Identifier	GEO accession number
definition	C	0..1	Reference(DeviceDefinition)	The reference to the definition for the device ref-1: SHALL have a contained resource if a local reference is provided
udiCarrier	Σ	0..*	BackboneElement	Unique Device Identifier (UDI) Barcode string
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
deviceIdentifier	Σ	0..1	string	Mandatory fixed portion of UDI
issuer		0..1	uri	UDI Issuing Organization
jurisdiction		0..1	uri	Regional UDI authority
carrierAIDC	Σ	0..1	base64Binary	UDI Machine Readable Barcode String
carrierHRF	Σ	0..1	string	UDI Human Readable Barcode String
entryType		0..1	code	barcode | rfid | manual + Binding: UDIEntryType (required): Codes to identify how UDI data was entered.
status	?!Σ	0..1	code	active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device.
statusReason		0..*	CodeableConcept	online | paused | standby | offline | not-ready | transduc-discon | hw-discon | off Binding: FHIRDeviceStatusReason (extensible): The availability status reason of the device.
distinctIdentifier		0..1	string	The distinct identification string
manufacturer		0..1	string	Name of device manufacturer
manufactureDate		0..1	dateTime	Date when the device was made
expirationDate		0..1	dateTime	Date and time of expiry of this device (if applicable)
lotNumber		0..1	string	Lot number of manufacture
serialNumber		0..1	string	Serial number assigned by the manufacturer
deviceName		0..*	BackboneElement	The name of the device as given by the manufacturer
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
name		1..1	string	The name of the device
type		1..1	code	udi-label-name | user-friendly-name | patient-reported-name | manufacturer-name | model-name | other Binding: DeviceNameType (required): The type of name the device is referred by.
modelNumber		0..1	string	The model number for the device
partNumber		0..1	string	The part number of the device
type	S	1..1	CodeableConcept	Technology name Binding: Platform Name (extensible)
specialization		0..*	BackboneElement	The capabilities supported on a device, the standards to which the device conforms for a particular purpose, and used for the communication
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
systemType		1..1	CodeableConcept	The standard that is used to operate and communicate
version		0..1	string	The version of the standard that is used to operate and communicate
version	S	0..1	BackboneElement	The actual design of the device or software version running on the device
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
type		0..1	CodeableConcept	The type of the device version
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
coding	Σ	0..*	Coding	Name of the gene panel Binding: Panel Name (required)
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Name of the gene panel
component		0..1	Identifier	A single component of the device version
value		1..1	string	The version text
property		0..*	BackboneElement	The actual configuration settings of a device as it actually operates, e.g., regulation status, time properties
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
type		1..1	CodeableConcept	Code that specifies the property DeviceDefinitionPropetyCode (Extensible)
valueQuantity	C	0..*	Quantity	Property value as a quantity qty-3: If a code for the unit is present, the system SHALL also be present
valueCode		0..*	CodeableConcept	Property value as a code, e.g., NTP4 (synced to NTP)
patient	C	0..1	Reference(Patient)	Patient to whom Device is affixed ref-1: SHALL have a contained resource if a local reference is provided
owner	C	0..1	Reference(Organization)	Organization responsible for device ref-1: SHALL have a contained resource if a local reference is provided
contact	C	0..*	ContactPoint	Details for human/organization for support cpt-2: A system is required if a value is provided.
location	C	0..1	Reference(Location)	Where the device is found ref-1: SHALL have a contained resource if a local reference is provided
url		0..1	uri	Network address to contact device
note		0..*	Annotation	Device notes and comments
safety	Σ	0..*	CodeableConcept	Safety Characteristics of Device
parent	C	0..1	Reference(Device)	The parent device ref-1: SHALL have a contained resource if a local reference is provided
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Device.language	preferred	CommonLanguages Additional Bindings Purpose AllLanguages Max Binding http://hl7.org/fhir/ValueSet/languages from the FHIR Standard
Device.udiCarrier.entryType	required	UDIEntryType http://hl7.org/fhir/ValueSet/udi-entry-type|4.0.1 from the FHIR Standard
Device.status	required	FHIRDeviceStatus http://hl7.org/fhir/ValueSet/device-status|4.0.1 from the FHIR Standard
Device.statusReason	extensible	FHIRDeviceStatusReason http://hl7.org/fhir/ValueSet/device-status-reason from the FHIR Standard
Device.deviceName.type	required	DeviceNameType http://hl7.org/fhir/ValueSet/device-nametype|4.0.1 from the FHIR Standard
Device.type	extensible	PlatformName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PlatformName from this IG
Device.version.type.coding	required	PanelName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PanelName from this IG

This structure is derived from Device

Summary

Mandatory: 1 element
Must-Support: 3 elements

Differential View

This structure is derived from Device

Name	Flags	Card.	Type	Description & Constraints
Device		0..*	Device	Item used in healthcare
identifier	S	0..1	Identifier	GEO accession number
type	S	1..1	CodeableConcept	Technology name Binding: Platform Name (extensible)
version	S	0..1	BackboneElement	The actual design of the device or software version running on the device
type		0..1	CodeableConcept	The type of the device version
coding		0..*	Coding	Name of the gene panel Binding: Panel Name (required)
text		0..1	string	Plain text representation of the concept Required Pattern: Name of the gene panel
Documentation for this format

Terminology Bindings (Differential)

Path	Conformance	ValueSet	URI
Device.type	extensible	PlatformName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PlatformName from this IG
Device.version.type.coding	required	PanelName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PanelName from this IG

Key Elements View

Name	Flags	Card.	Type	Description & Constraints
Device		0..*	Device	Item used in healthcare
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	S	0..1	Identifier	GEO accession number
status	?!Σ	0..1	code	active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device.
type	S	1..1	CodeableConcept	Technology name Binding: Platform Name (extensible)
version	S	0..1	BackboneElement	The actual design of the device or software version running on the device
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
type		0..1	CodeableConcept	The type of the device version
coding	Σ	0..*	Coding	Name of the gene panel Binding: Panel Name (required)
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Name of the gene panel
value		1..1	string	The version text
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Device.status	required	FHIRDeviceStatus http://hl7.org/fhir/ValueSet/device-status|4.0.1 from the FHIR Standard
Device.type	extensible	PlatformName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PlatformName from this IG
Device.version.type.coding	required	PanelName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PanelName from this IG

Snapshot View

Name	Flags	Card.	Type	Description & Constraints
Device		0..*	Device	Item used in healthcare
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation
contained		0..*	Resource	Contained, inline Resources
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!N	0..*	Extension	Extensions that cannot be ignored Slice: Unordered, Open by value:url
identifier	S	0..1	Identifier	GEO accession number
definition	C	0..1	Reference(DeviceDefinition)	The reference to the definition for the device ref-1: SHALL have a contained resource if a local reference is provided
udiCarrier	Σ	0..*	BackboneElement	Unique Device Identifier (UDI) Barcode string
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
deviceIdentifier	Σ	0..1	string	Mandatory fixed portion of UDI
issuer		0..1	uri	UDI Issuing Organization
jurisdiction		0..1	uri	Regional UDI authority
carrierAIDC	Σ	0..1	base64Binary	UDI Machine Readable Barcode String
carrierHRF	Σ	0..1	string	UDI Human Readable Barcode String
entryType		0..1	code	barcode | rfid | manual + Binding: UDIEntryType (required): Codes to identify how UDI data was entered.
status	?!Σ	0..1	code	active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device.
statusReason		0..*	CodeableConcept	online | paused | standby | offline | not-ready | transduc-discon | hw-discon | off Binding: FHIRDeviceStatusReason (extensible): The availability status reason of the device.
distinctIdentifier		0..1	string	The distinct identification string
manufacturer		0..1	string	Name of device manufacturer
manufactureDate		0..1	dateTime	Date when the device was made
expirationDate		0..1	dateTime	Date and time of expiry of this device (if applicable)
lotNumber		0..1	string	Lot number of manufacture
serialNumber		0..1	string	Serial number assigned by the manufacturer
deviceName		0..*	BackboneElement	The name of the device as given by the manufacturer
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
name		1..1	string	The name of the device
type		1..1	code	udi-label-name | user-friendly-name | patient-reported-name | manufacturer-name | model-name | other Binding: DeviceNameType (required): The type of name the device is referred by.
modelNumber		0..1	string	The model number for the device
partNumber		0..1	string	The part number of the device
type	S	1..1	CodeableConcept	Technology name Binding: Platform Name (extensible)
specialization		0..*	BackboneElement	The capabilities supported on a device, the standards to which the device conforms for a particular purpose, and used for the communication
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
systemType		1..1	CodeableConcept	The standard that is used to operate and communicate
version		0..1	string	The version of the standard that is used to operate and communicate
version	S	0..1	BackboneElement	The actual design of the device or software version running on the device
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
type		0..1	CodeableConcept	The type of the device version
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
coding	Σ	0..*	Coding	Name of the gene panel Binding: Panel Name (required)
text	Σ	0..1	string	Plain text representation of the concept Required Pattern: Name of the gene panel
component		0..1	Identifier	A single component of the device version
value		1..1	string	The version text
property		0..*	BackboneElement	The actual configuration settings of a device as it actually operates, e.g., regulation status, time properties
id		0..1	string	Unique id for inter-element referencing
extension	N	0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
type		1..1	CodeableConcept	Code that specifies the property DeviceDefinitionPropetyCode (Extensible)
valueQuantity	C	0..*	Quantity	Property value as a quantity qty-3: If a code for the unit is present, the system SHALL also be present
valueCode		0..*	CodeableConcept	Property value as a code, e.g., NTP4 (synced to NTP)
patient	C	0..1	Reference(Patient)	Patient to whom Device is affixed ref-1: SHALL have a contained resource if a local reference is provided
owner	C	0..1	Reference(Organization)	Organization responsible for device ref-1: SHALL have a contained resource if a local reference is provided
contact	C	0..*	ContactPoint	Details for human/organization for support cpt-2: A system is required if a value is provided.
location	C	0..1	Reference(Location)	Where the device is found ref-1: SHALL have a contained resource if a local reference is provided
url		0..1	uri	Network address to contact device
note		0..*	Annotation	Device notes and comments
safety	Σ	0..*	CodeableConcept	Safety Characteristics of Device
parent	C	0..1	Reference(Device)	The parent device ref-1: SHALL have a contained resource if a local reference is provided
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Device.language	preferred	CommonLanguages Additional Bindings Purpose AllLanguages Max Binding http://hl7.org/fhir/ValueSet/languages from the FHIR Standard
Device.udiCarrier.entryType	required	UDIEntryType http://hl7.org/fhir/ValueSet/udi-entry-type|4.0.1 from the FHIR Standard
Device.status	required	FHIRDeviceStatus http://hl7.org/fhir/ValueSet/device-status|4.0.1 from the FHIR Standard
Device.statusReason	extensible	FHIRDeviceStatusReason http://hl7.org/fhir/ValueSet/device-status-reason from the FHIR Standard
Device.deviceName.type	required	DeviceNameType http://hl7.org/fhir/ValueSet/device-nametype|4.0.1 from the FHIR Standard
Device.type	extensible	PlatformName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PlatformName from this IG
Device.version.type.coding	required	PanelName https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/ValueSet/PanelName from this IG

This structure is derived from Device

Summary

Mandatory: 1 element
Must-Support: 3 elements

Other representations of profile: CSV, Excel, Schematron